| SATURDAY, JULY 21
|
| 7:00 | Registration and information desk opens at the Tietgensgade entrance |
| 8:30 - 12:30 | TUTORIALS 1 to 7, morning |
| 12:30 - 13:30 | Lunch |
| 13:30 - 17:30 | TUTORIALS 1 to 7, afternoon |
| 19:00 - 22:00 | Opening Reception at
Restaurant NIMB |
| SUNDAY, JULY 22 |
| 7:00 | Registration and information desk opens at the Tietgensgade entrance |
| 8:30 - 9:00 | Opening remarks, Søren Brunak and Anders Krogh |
Protein Structure and Modeling
Chair: Anna Tramontano
|
| 9:00 - 9:45 |
Protein folding, molecular evolution, and human disease
Keynote talk by CHRISTOPHER DOBSON |
| 9:45 - 10:10 |
An insight into domain combinations
Gordana Apic, Julian Gough, Sarah A. Teichmann
|
| 10:10 - 10:50 | Coffee break |
| 10:50 - 11:15 |
Prediction of the coupling specificity of G
protein coupled receptors to their G
proteins
Steffen Möller, Jaak Vilo, Michael D.R.
Croning
|
| 11:15 - 11:40 |
Improved prediction of the number of residue
contacts in proteins by recurrent neural
networks
Gianluca Pollastri, Pierre Baldi, Pietro
Fariselli, Rita Casadio
|
| 11:40 - 12:05 |
Non-symmetric score matrices and the
detection of homologous transmembrane
proteins
Tobias Mueller, Sven Rahmann, Marc
Rehmsmeier
|
| 12:05 - 12:30 |
Generating protein interaction maps from
incomplete data: application to fold
assignment
Michael Lappe, Jong Park, Oliver Niggemann,
Liisa Holm
|
| 12:30 - 14:00 | Lunch |
Sequence Motifs, Alignments and Families
Chair: Michael Gribskov
|
| 14:00 - 14:45 |
Structural genomics
Keynote talk by CHRIS SANDER
|
| 14:45 - 15:10 |
0j.py: a software tool for low complexity
proteins and protein domains
Michael J. Wise
|
| 15:10 - 15:50 | Coffee break |
| 15:50 - 16:15 |
Separating real motifs from their artifacts
Mathieu Blanchette, Saurabh Sinha
|
| 16:15 - 16:40 |
Feature selection for DNA methylation based
cancer classification
Fabian Model, Peter Adorjan, Alexander Olek,
Christian Piepenbrock
|
| 16:40 - 17:05 |
An algorithm for finding signals of unknown length in DNA sequences
Giulio Pavesi, Giancarlo Mauri, Graziano
Pesole
|
| 17:05 - 17:35 |
Discussion: Public Library of Science
Initiative
Organized by Michael B. Eisen, University of California, Berkeley
|
| 17:00 - 19:00 | POSTER SESSION 1 at Restaurant NIMB
|
| INDUSTRY NIGHT
|
| 18:00 - 21:00
| Industry Night Reception at Restaurant NIMB, Exhibition stands open untill 21:00
|
| 18:00 - 21:00 | Software Demonstrations by Platinum Sponsors in Concert Hall
|
| MONDAY, JULY 23 |
| 8:00 | Registration and information desk opens at the Tietgensgade entrance |
Networks and Modeling
Chair: Alvis Brazma |
| 8:30 - 9:15 |
Protein interactions
Keynote talk by DAVID EISENBERG |
| 9:15 - 9:40 |
Protein-protein interaction map inference
using interacting domain profile pairs
Jérôme Wojcik, Vincent Schächter
|
| 9:40 - 10:05 |
Inferring subnetworks from perturbed
expression profiles
Dana Pe'er, Aviv Regev, Gal Elidan, Nir
Friedman
|
| 10:05 - 10:40 | Coffee break |
| 10:40 - 11:05 |
GEST: a gene expression search tool based on
a novel Bayesian similarity metric
Lawrence Hunter, Ronald C. Taylor, Sonia M.
Leach, Richard Simon
|
| 11:05 - 11:30 |
Rich probabilistic models for gene
expression
Eran Segal, Ben Taskar, Audrey Gasch, Nir
Friedman, Daphne Koller
|
| 11:30 - 11:55 |
Molecular classification of multiple tumor types
Chen-Hsiang Yeang, Sridhar Ramaswamy, Pablo Tamayo, Sayan Mukherjee, Ryan M. Rifkin, Michael Angelo,
Michael Reich, Eric Lander, Jill P. Mesirov, Todd Golub
|
| 11:55 - 12:20 |
Centralization: a new
method for the normalization of gene
expression data
Alexander Zien, Thomas Aigner, Ralf Zimmer,
Thomas Lengauer
|
| 12:20 - 13:50 | Lunch |
Networks and Modeling, continued
Chair: Søren Brunak |
| 13:50 - 14:35 |
The phenomenon of the web
Keynote talk by BERNARDO HUBERMAN |
| 14:35 - 15:00 |
Visualizing associations between genome sequences and
gene expression data using genome-mean expression profiles
Derek Y. Chiang, Patrick
O. Brown, Michael B. Eisen
|
| 15:00 - 15:35 | Coffee break |
| 15:35 - 16:00 |
Identifying splits with clear separation: a
new class discovery method for gene
expression data
Anja von Heydebreck, Wolfgang Huber,
Annemarie Poustka, M.Vingron
|
| 16:00 - 16:25 |
CLIFF: Clustering of high-dimensional
microarray data via iterative feature
filtering using normalized cuts
Eric P. Xing, Richard M. Karp
|
| 16:25 - 17:55 |
Workshop: Bioethics and Fiction Science
Organized by Pierre Baldi, University of California, Irvine
|
| 16:00 - 18:00 | POSTER SESSION 2 at Restaurant NIMB
|
| BOAT TRIP AND BANQUET DINNER AT RESTAURANT BASECAMP ON HOLMEN
|
| 18:00 | Busses depart from Tietgensgade just outside Tivoli Gardens
|
| TUESDAY, JULY 24 |
Gene Structure, Regulation, and Modeling
Chair: Gary Stormo |
| 9:00 - 9:45 |
The modern RNA world: many genes don't encode proteins
Keynote talk by SEAN EDDY |
| 9:45 - 10:10 |
Promoter prediction in the human genome
Sridhar Hannenhalli, Samuel Levy
|
| 10:10 - 10:45 | Coffee break |
| 10:45 - 11:10 |
Joint modeling of DNA sequence and physical
properties to improve eukaryotic promoter
recognition
Uwe Ohler, Heinrich Niemann, Guo-chun Liao, Gerald M. Rubin
|
| 11:10 - 11:35 |
Computational expansion of genetic networks
Amos Tanay, Ron Shamir
|
| 11:35 - 12:00 |
GENIES: a natural-language processing
system for the Extraction of Molecular Pathways
from Journal Articles
Carol Friedman, Pauline Kra, Hong Yu, Michael
Krauthammer, Andrey Rzhetsky
|
| 12:00 - 12:25 |
Designing better phages
Steven S. Skiena
|
| 12:25 - 14:00 | Lunch |
| 13:15 - 13:45 | NorFA Meeting |
Gene Structure, Regulation, and Modeling, continued
Chair: Anders G. Pedersen |
| 14:00 - 14:50 |
Computational analysis of RNA splicing
Overton Lecture by CHRIS BURGE |
| 14:50 - 15:15 |
Disambiguating proteins, genes, and RNA in
text: a machine learning approach
Vasileios Hatzivassiloglou, Pablo A. Duboue,
Andrey Rzhetsky
|
| 15:15 - 15:50 | Coffee break |
| 15:50 - 16:15 |
Gene recognition based on DAG shortest paths
John S. Chuang, Dan Roth
|
| 16:15 - 16:40 |
An efficient algorithm for finding short
approximate non-tandem repeats
Ezekiel F. Adebiyi, Tao Jiang, Michael
Kaufmann
|
| 16:40 - 17:05 |
Integrating genomic homology into gene
structure prediction
Ian Korf, Paul Flicek, Daniel Duan, Michael R. Brent
|
| 17:00 - 19:00 | POSTER SESSION 3 at Restaurant NIMB
|
| 17:05 - 19:00 |
IP WORKSHOP: Putting Informatics to Work:
Intellectual Property and Business Promises
presented by Heller Ehrman White & McAuliffe
LLP
|
| WEDNESDAY, JULY 25 |
| 8:00 - 8:30 | ISCB welcome & presentation of ISMB2002 |
Methods
Chair: Pierre Rouzé |
| 8:30 - 9:15 |
Membrane proteins: from the computer to the bench and back
Keynote talk by GUNNAR VON HEIJNE |
| 9:15 - 9:40 |
Design of a compartmentalized shotgun
assembler for the human genome
Daniel H. Huson, Knut Reinert, Saul A. Kravitz, Karin A. Remington, Art L. Delcher,
Ian M. Dew, Mike Flanigan, Aaron L. Halpern,
Zhongwu Lai, Clark M. Mobarry, Granger G.
Sutton, Eugene W. Myers
|
| 9:40 - 10:05 |
Probabilistic approaches to the use of
higher order clone relationships in physical
map assembly
David J. States, Volker Nowotny, Thomas W. Blackwell
|
| 10:05 - 10:35 | Coffee break |
| 10:35 - 11:00 |
Fragment assembly with double-barreled data
Pavel A. Pevzner, Haixu Tang
|
| 11:00 - 11:25 |
SCOPE: a probabilistic model for scoring tandem
mass spectra against a peptide database
Vineet Bafna, Nathan Edwards
|
| 11:25 - 11:50 |
Probe selection algorithms with applications
in the analysis of microbial communities
James Borneman, Marek Chrobak, Gianluca
Della Vedova, Andres Figueroa, Tao Jiang
|
| 11:50 - 12:15 |
Fast optimal leaf ordering for hierarchical clustering
Ziv Bar-Joseph, David K. Gifford, Tommi S. Jaakkola
|
| 12:15 - 13:00 | ISCB open meeting
|
| 12:30 - 14:00 |
Lunch |
| 14:00 - 14:25 |
Separation of samples into their constituents using gene expression data
D. Venet, F. Pecasse, C. Maenhaut, H. Bersini
|
Sequence and Phylogeny
Chair: Frédérique Galisson |
| 14:25 - 14:50 |
New approaches for reconstructing
phylogenies from gene order data
Bernard M.E. Moret, Li-San Wang, Tandy
Warnow, Stacia K. Wyman
|
| 14:50 - 15:20 | Coffee break |
| 15:20 - 15:45 |
Using mixtures of common ancestors for
estimating the probabilities of discrete
events in biological sequences
Eleazar Eskin, William N. Grundy, Yoram
Singer
|
| 15:45 - 16:10 |
Designing fast converging phylogenetic
methods
Luay Nakhleh, Usman Roshan, Katherine St.
John, Jerry Sun, Tandy Warnow
|
| 16:10 - 16:35 |
Probabilistic divergence measures for
detecting interspecies recombination
Dirk Husmeier, Frank Wright
|
| 16:40 - 17:10 |
Awards for best paper and poster
Closing remarks |
|
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